http://wiki.sysmo-db.org/ 2010-09-07T20:19:39+01:00 http://wiki.sysmo-db.org/ http://wiki.sysmo-db.org/lib/images/favicon.ico text/html 2009-01-26T16:52:51+01:00 http://wiki.sysmo-db.org/pals/afsaneh_maleki-dizaji?rev=1232988771&do=diff About Me Post Doctoral Research Associate, Computational Systems Biology, Department of Computer Science University of Sheffield, Project The goal of this project is to obtain a complete and quantitative description of the catabolism and bioenergetics of E. coli grown under a variety of (an)aerobic respiratory conditions, including the relationships between flux (physiology) and the regulatory networks. The data will be quantitative and reproducible, and will therefore be suitable for ma… text/html 2009-05-22T11:46:37+01:00 http://wiki.sysmo-db.org/pals/carolyn_lam?rev=1242989197&do=diff About me Project PSYSMO Field Dynamic modeling of metabolic pathways. Summary of current DM solution Contact details carolyn.lam@helmholtz-hzi.de text/html 2009-01-26T16:49:09+01:00 http://wiki.sysmo-db.org/pals/elon_correa?rev=1232988549&do=diff About Me I'm a research associate at the Laboratory for Bioanalytical Spectroscopy, Manchester Interdisciplinary Biocentre. Project “Systems Biology of a genetically engineered Pseudomonas fluorescens with inducible exopolysaccharide production: analysis of the dynamics and robustness of metabolic networks” text/html 2009-10-07T11:50:32+01:00 http://wiki.sysmo-db.org/pals/falko_krause?rev=1254912632&do=diff About Me I'm a bioinformatician from Berlin (Germany). Before I stared my PhD in the SysMo project Translucent I developed semanticSBML, a software for building, checking, merging and displaying SBML files. Project www.translucent-network.org TRANSLUCENT aims to obtain a comprehensive understanding of the mechanisms that ensure proper cation uptake and metabolism in the model yeast Saccharomyces cerevisiae. text/html 2009-01-26T16:53:07+01:00 http://wiki.sysmo-db.org/pals/femke_mensonides?rev=1232988787&do=diff About Me I am a biochemist and currently a postdoctoral researcher at the VU University Amsterdam. I am mainly doing experimental work, but also kinetic modelling. Project My main project is MOSES. In addition, I am involved in the SulfoSYS project. text/html 2009-03-31T12:06:15+01:00 http://wiki.sysmo-db.org/pals/jay_moore?rev=1238497575&do=diff About Me I'm a bioinformatician from Warwick Systems Biology Centre. Before my MSc in Plant Genetic Resources, and PhD in Plant and Environmental Sciences (Brassica comparative genomics), I worked as an industrial software engineer in the local government, utility and management consultancy sectors. In my first postdoc I developed a software application, TreeMos, for identifying and visualising phylogenetic mosaicism, and worked on the evolution of flower architecture in Barley. text/html 2009-01-29T14:44:28+01:00 http://wiki.sysmo-db.org/pals/john_heap?rev=1233240268&do=diff About Me I'm a Postdoctoral Research Fellow at The University of Nottingham in the UK, and an 'experimentalist' (molecular microbiologist). Project Project 2: COSMIC “Systems Biology of Clostridium acetobutylicum - a possible answer to dwindling crude oil reserves” text/html 2009-01-26T16:54:02+01:00 http://wiki.sysmo-db.org/pals/leif_steil?rev=1232988842&do=diff About Me I am a Post Doc at the university of Greifswald. Project BaCell-SysMO Field Summary of current DM solution Contact details Dr. Leif Steil Ernst-Moritz-Arndt-University Greifswald Interfaculty Institute of Genetics and Functional Genomics text/html 2010-02-04T10:07:14+01:00 http://wiki.sysmo-db.org/pals/maksim_zakhartsev?rev=1265278034&do=diff Maksim Zakhartsev About me Project Field Summary of current DM solution Contact details text/html 2009-01-26T16:54:20+01:00 http://wiki.sysmo-db.org/pals/malkey_verma?rev=1232988860&do=diff About Me I'm postdoctoral research associate at the MIB, The University of Manchester, Manchester, UK. Project MOSES (Microorganism System Biology: Energy and Saccharomyces cerevisiae) The regulation analysis of MOSES under which we are studying, the extents to which process rates (edges in network terms) are controlled and regulated through metabolism, through signal transduction (e.g. cAMP-PKA), through gene expression (mRNA-transcription and protein-translation) are quantifying using s… text/html 2009-01-26T17:27:46+01:00 http://wiki.sysmo-db.org/pals/maria_rodriguez-fernandez?rev=1232990866&do=diff About Me I'm a research associate at the IIM-CSIC (Spanish Council for Scientific Research) based in Vigo, Spain. Project “Ion and solute homeostasis in enteric bacteria: an integrated view generated from the interface of modelling and biological experimentation” text/html 2009-01-26T16:53:21+01:00 http://wiki.sysmo-db.org/pals/mark_musters?rev=1232988801&do=diff About Me I'm a modeller at Wageningen UR (The Netherlands) and specialized in the development of kinetic models of inter- and intracellular processes. Project SysMOLAB Field Summary of current DM solution Contact details text/html 2010-02-04T10:07:14+01:00 http://wiki.sysmo-db.org/pals/martijn_bekker?rev=1265278034&do=diff Martijn Bekker About Me University of Amsterdam Project SysMOLAB Field Experimentalist Summary of current DM solution Contact text/html 2009-02-17T10:59:39+01:00 http://wiki.sysmo-db.org/pals/paul_mcdermott?rev=1234868379&do=diff Name Paul McDermott About me I am an experimentalist senior research officer at the University of Essex. Project PSYSMO Field Solute stress in Pseudomonas putida. Summary of current DM solution There is an eGroupWare site set up as the PSYSMO intranet site, produced by Heike Bauer. text/html 2009-01-26T16:53:50+01:00 http://wiki.sysmo-db.org/pals/pawel_sierocinski?rev=1232988830&do=diff About Me I am a PhD student at Wageningen University in the Netherlands. Project SulfoSys SylfoSys is the only project in SYSMO that focuses on Archaea - more specifically on Sulfolobus solfataricus. The aim of the project is to investigate the changes and regulation of the Central Carbon Metabolism (CCM) in different temperature values. As far as the wet biology goes, we are concerned about obtaining the whole set of the -omics data (proteomics, transcriptomics and metabolomics). Combined … text/html 2009-02-03T15:15:01+01:00 http://wiki.sysmo-db.org/pals/peter_goetz?rev=1233674101&do=diff About Me Modeler and experimentalist with Chemical Engineering background. Project Project 2: COSMIC “Systems Biology of Clostridium acetobutylicum - a possible answer to dwindling crude oil reserves” Close cooperation with PSYSMO, MOSES and BaCell-SysMO at IBVT Stuttgart. text/html 2010-02-04T10:07:14+01:00 http://wiki.sysmo-db.org/pals/sara_jabbari?rev=1265278034&do=diff Name Sara Jabbari About me I'm a Postdoctoral Research Fellow at The University of Nottingham in the UK, specialising in mathematical modelling. Project Project 2: COSMIC “Systems Biology of Clostridium acetobutylicum - a possible answer to dwindling crude oil reserves”. text/html 2009-05-26T09:48:24+01:00 http://wiki.sysmo-db.org/pals/sebastian_henkel?rev=1243327704&do=diff About me PhD student as research associate at the Institute for System Dynamics (ISYS), Universität Stuttgart, Germany. Engineering background->modelling, identification and analyses. Project The goal of this project is to obtain a complete and quantitative description of the catabolism and bioenergetics of E. coli grown under a variety of (an)aerobic respiratory conditions, including the relationships between flux (physiology) and the regulatory networks. The data will be quantitative and re… text/html 2008-09-28T19:39:00+01:00 http://wiki.sysmo-db.org/pals/start?rev=1222627140&do=diff SysMO-DB pals are the heart of our method for making SysMO-DB happen. These are the local pioneers, the early adopters, the eyes and ears of the SysMO projects. Working with too many groups and so many voices is just too complicated and too much noise. By working with a small team of committed experimentalists, modellers and bioinformaticians drawn from the projects we can follow the mantra that “if we build for the few we can build for the many”. We can also build a close relationship between… text/html 2009-05-22T11:05:45+01:00 http://wiki.sysmo-db.org/pals/template?rev=1242986745&do=diff About me Project Field Summary of current DM solution Contact details text/html 2010-04-20T16:35:55+01:00 http://wiki.sysmo-db.org/pals/tomas_fiedler?rev=1271777755&do=diff About me Project Field Summary of current DM solution Contact details text/html 2009-01-26T16:53:31+01:00 http://wiki.sysmo-db.org/pals/walid_omara?rev=1232988811&do=diff About Me I am a Postdoctoral Research Fellow in the University of Warwick. In my PhD, my research included yeast genomics, transcriptomics and proteomics. In my MSc, my research was mainly on the mirobiological quality control and quality assurace. I worked in industry for pharmaceutical company, where I have had a role in establishing SOPs and protocols for different procedures, experiments, analytical methods text/html 2010-06-01T07:39:27+01:00 http://wiki.sysmo-db.org/pals/walter_glaser?rev=1275374367&do=diff About Me I'm a biologist turned bioinformatican working in a wetlab. Our lab is based in Vienna, Austria and is mainly interested in studying Host-Pathogen Interactions of pathogenic yeasts. Project MOSES is a SysMO consortium dedicated to studying the ATP metabolism of saccharomyces cerevisiae. To complement existing top-down and bottom-up SB strategies, here a domino, problem oriented SB approach is developed, which follows the lines of regulation, pertinent to a selected highly connected … text/html 2008-07-11T19:32:03+01:00 http://wiki.sysmo-db.org/pals/what?rev=1215801123&do=diff We need to do two major activities for the first phase of SysMO-DB * A show and tell * A first cut SysMO-SEEK and JERM specification and pilot Show and Tell This is made up of two major activities * An audit of all the projects, which is much more systematic than the first round of questionnaires. text/html 2010-04-20T16:35:29+01:00 http://wiki.sysmo-db.org/pals/who?rev=1271777729&do=diff At the first SysMO Evaluation conference in Bad Honnef (30 June-2 July 2008) we formed our first team of pals which has grown up to 24 (former and current) people. Falko Krause from the TRANSLUCENT project. He is a bioinformatician based in Berlin, Germany